PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G23750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 285aa    MW: 31779.4 Da    PI: 5.0632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G23750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.7e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+llv++v+q+G g+W+++a+  g++R++k+c++rw +yl
  OMERI02G23750.1 17 KGPWTAQEDKLLVEYVRQHGEGRWNSVAKITGLKRSGKSCRLRWVNYL 64
                     79********************************************97 PP

2Myb_DNA-binding50.93.5e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  OMERI02G23750.1  70 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5421264IPR017930Myb domain
SuperFamilySSF466892.09E-3015111IPR009057Homeodomain-like
SMARTSM007177.4E-171666IPR001005SANT/Myb domain
PfamPF002492.5E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-241871IPR009057Homeodomain-like
CDDcd001679.72E-131964No hitNo description
PROSITE profilePS5129424.93365119IPR017930Myb domain
SMARTSM007174.5E-1569117IPR001005SANT/Myb domain
PfamPF002496.2E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2472117IPR009057Homeodomain-like
CDDcd001674.57E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEGQQFAWGR EEGGWRKGPW TAQEDKLLVE YVRQHGEGRW NSVAKITGLK RSGKSCRLRW  60
VNYLRPDLKR GKITPQEESV ILELHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKGKP  120
SKNIERARAR FLKQRREMQQ QSQLMQSGQQ QQQLGQDDDA TSAVVDDNLA EVAPPAAASL  180
THDGELQIMQ EMAPDMDDLL YYHPGDMSPY SYDDLLGSGG GDVASAGAAA STSEGSSEEL  240
DGGATWGSLW NLDDVVHDMM IDCAAGAGCC WGSFPPLQDQ GLAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26171177106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118070.0AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624171.10.0PREDICTED: transcription factor MYB57
TrEMBLA0A0E0CNH10.0A0A0E0CNH1_9ORYZ; Uncharacterized protein
STRINGORGLA02G0210000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-67myb domain protein 79